STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_1502PFAM: Mammalian cell entry related domain protein; KEGG: hypothetical protein LOC100213142. (228 aa)    
Predicted Functional Partners:
Gbro_1128
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_00411 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.897
Gbro_2988
PFAM: protein of unknown function DUF140; KEGG: scl:sce8301 putative ABC transport system permease protein.
 
 
 0.877
Gbro_1508
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_01262 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.871
Gbro_1129
PFAM: protein of unknown function DUF140; KEGG: ank:AnaeK_1997 protein of unknown function DUF140.
 
 
 0.856
Gbro_3951
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_01262 ABC-type transport system involved in resistance to organic solvents, permease component.
 
 
 0.853
Gbro_1127
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00410 ABC-type transport system, ATP- binding component.
 
 
 0.852
Gbro_1505
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: nis:NIS_1335 hypothetical protein.
 
  
 0.847
Gbro_1507
PFAM: Mammalian cell entry related domain protein; KEGG: YALI0A11198p.
 
  
 0.845
Gbro_1132
TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: kpe:KPK_A0105 putative ABC transporter, periplasmic substrate-binding protein.
 
  
 0.844
Gbro_2987
PFAM: protein of unknown function DUF140; KEGG: ade:Adeh_1863 ABC amino acid transporter, inner membrane subunit.
 
 
 0.838
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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