STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_1736PFAM: PspC domain protein; ATP-binding region ATPase domain protein; KEGG: gsu:GSU1292 sensory box histidine kinase. (421 aa)    
Predicted Functional Partners:
Gbro_1737
PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: dia:Dtpsy_0424 two component transcriptional regulator, LuxR family.
 
 
 0.977
Gbro_1735
PFAM: PspC domain protein; KEGG: dma:DMR_19100 hypothetical protein.
 
  
 0.970
Gbro_1734
Hypothetical protein.
       0.778
Gbro_1936
PFAM: regulatory protein LuxR; response regulator receiver; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; response regulator receiver; KEGG: xca:xccb100_3213 two-component system regulatory protein.
 
 
 0.625
Gbro_4304
PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: eba:ebA6278 nitrate/nitrite response regulator.
 
 
 0.625
Gbro_4472
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_1658 hypothetical protein.
 
    0.591
Gbro_3238
PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; sigma-70 region 4 domain protein; SMART: regulatory protein LuxR; response regulator receiver; KEGG: scl:sce5431 two-component system response regulator.
 
 
 0.583
Gbro_3997
PFAM: aminoglycoside phosphotransferase; KEGG: mlo:mll6593 hypothetical protein.
   
    0.568
Gbro_4119
PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator.
 
 
 0.568
Gbro_3239
PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase.
  
     0.552
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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