STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_1864PFAM: MgtE intracellular region; CBS domain containing protein; KEGG: gur:Gura_2041 MgtE intracellular region. (438 aa)    
Predicted Functional Partners:
Gbro_1863
PFAM: protein of unknown function DUF1003; KEGG: pfo:Pfl01_4309 hypothetical protein.
 
     0.957
Gbro_1862
KEGG: dvm:DvMF_2682 membrane-bound lytic murein transglycosylase B-like protein.
       0.714
Gbro_1866
PFAM: extracellular solute-binding protein family 1; KEGG: noc:Noc_0282 extracellular solute-binding protein.
       0.673
Gbro_1865
Hypothetical protein.
     
 0.618
Gbro_1861
ATPase-like, ParA/MinD; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.562
Gbro_1867
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: noc:Noc_0281 ABC transporter, inner membrane subunit.
     
 0.550
Gbro_1869
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: noc:Noc_0279 ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
  
 0.547
Gbro_0297
PFAM: Mg2 transporter protein CorA family protein; KEGG: mms:mma_0084 Mg2+/Co2+ transporter.
 
   
 0.463
Gbro_1868
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: noc:Noc_0280 ABC transporter, inner membrane subunit.
       0.457
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.421
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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