STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmERibosomal protein L31; Binds the 23S rRNA. (75 aa)    
Predicted Functional Partners:
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
 
 
 0.987
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.984
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.984
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
 
 0.982
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: mxa:MXAN_3069 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.981
rpmB-2
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: nam:NAMH_1582 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.981
rpsI
PFAM: ribosomal protein S9; KEGG: ank:AnaeK_3453 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.980
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: pub:SAR11_0255 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.980
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.978
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: tmz:Tmz1t_1632 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.975
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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