STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_1934PFAM: iron-containing alcohol dehydrogenase; 3- dehydroquinate synthase; KEGG: gbm:Gbem_1986 iron-containing alcohol dehydrogenase. (386 aa)    
Predicted Functional Partners:
Gbro_0581
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rme:Rmet_1093 alcohol dehydrogenase GroES- like protein.
  
 0.943
Gbro_3529
TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: reh:H16_B1433 alcohol dehydrogenase, Zn- dependent.
  
 0.943
Gbro_3128
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rpa:RPA0674 alcohol dehydrogenase.
  
 0.935
Gbro_0958
PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_B1170 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.930
Gbro_1599
PFAM: Aldehyde Dehydrogenase; KEGG: mpt:Mpe_A2577 aldehyde dehydrogenase.
 
 0.930
Gbro_3847
PFAM: Aldehyde Dehydrogenase; KEGG: rpi:Rpic_1338 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.930
Gbro_1933
PFAM: VWA containing CoxE family protein; KEGG: mxa:MXAN_3786 hypothetical protein.
 
     0.905
Gbro_2005
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: hypothetical protein; K00274 monoamine oxidase.
     
 0.903
Gbro_4212
Alkane 1-monooxygenase; PFAM: fatty acid desaturase; Rubredoxin-type Fe(Cys)4 protein; KEGG: rpf:Rpic12D_4221 alkane 1-monooxygenase.
    
  0.901
Gbro_1935
PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: mpt:Mpe_A0358 two-component sensor histidine kinase-like protein.
 
     0.866
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.