STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2000PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mca:MCA1018 ErfK/YbiS/YcfS/YnhG family protein. (404 aa)    
Predicted Functional Partners:
Gbro_2002
Hypothetical protein; KEGG: mxa:MXAN_4606 carbohydrate-binding protein.
     
 0.667
Gbro_3941
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.623
Gbro_3186
PFAM: DNA polymerase III delta; KEGG: gme:Gmet_2298 DNA polymerase III, delta subunit.
  
     0.595
Gbro_3253
PFAM: Methionine synthase vitamin-B12 independent; KEGG: dal:Dalk_5194 hypothetical protein.
  
     0.552
Gbro_4022
TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: acp:A2cp1_3950 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase.
    
 0.528
Gbro_2001
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pla:Plav_0463 acyl-CoA dehydrogenase domain- containing protein.
       0.504
crgA
Protein of unknown function UPF0233; Involved in cell division; Belongs to the CrgA family.
  
   
 0.469
Gbro_0520
PFAM: Type II secretion system F domain; KEGG: bpd:BURPS668_A3093 type II secretion system protein.
  
     0.463
Gbro_3469
Hypothetical protein.
  
     0.456
Gbro_0510
PFAM: Colicin V production protein; peptidase S1 and S6 chymotrypsin/Hap; KEGG: ank:AnaeK_0414 peptidase S1 and S6 chymotrypsin/Hap.
 
   
 0.429
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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