Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gbro_2003Ceramidase; PFAM: Neutral/alkaline nonlysosomal ceramidase; KEGG: pap:PSPA7_4675 hypothetical protein. (682 aa)    
Predicted Functional Partners:
Gbro_2915
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine phosphorylation site; KEGG: yen:YE2104 PTS system beta-glucoside-specific IIABC component.
  
  
 0.889
Gbro_2005
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: hypothetical protein; K00274 monoamine oxidase.
 
   
 0.863
Gbro_2004
PFAM: regulatory protein TetR; KEGG: pfo:Pfl01_2752 TetR family transcriptional regulator.
 
     0.828
Gbro_2217
TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: aav:Aave_4250 PTS system, fructose subfamily, IIC subunit.
     
 0.672
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.612
Gbro_4355
PFAM: beta-lactamase domain protein; KEGG: pau:PA14_24810 hypothetical protein.
  
 
 0.511
Gbro_2007
PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA4457 putative methyl viologen resistance protein.
     
 0.510
Gbro_2006
PFAM: regulatory protein TetR; KEGG: scl:sce1385 TetR family transcriptional regulator.
       0.497
Gbro_4398
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.472
Gbro_0466
KEGG: dol:Dole_1312 hypothetical protein.
  
     0.457
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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