STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2004PFAM: regulatory protein TetR; KEGG: pfo:Pfl01_2752 TetR family transcriptional regulator. (216 aa)    
Predicted Functional Partners:
Gbro_2003
Ceramidase; PFAM: Neutral/alkaline nonlysosomal ceramidase; KEGG: pap:PSPA7_4675 hypothetical protein.
 
     0.828
Gbro_2005
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: hypothetical protein; K00274 monoamine oxidase.
       0.799
Gbro_2908
PFAM: Sucraseferredoxin family protein; KEGG: csa:Csal_1040 sucraseferredoxin-like protein.
  
     0.542
Gbro_3385
Hypothetical protein; KEGG: similar to H02F09.3.
  
    0.534
Gbro_2006
PFAM: regulatory protein TetR; KEGG: scl:sce1385 TetR family transcriptional regulator.
  
    0.499
Gbro_2007
PFAM: major facilitator superfamily MFS_1; KEGG: eca:ECA4457 putative methyl viologen resistance protein.
  
    0.498
Gbro_1281
TIGRFAM: FAD-linked oxidoreductase; PFAM: D-arabinono-14-lactone oxidase; FAD linked oxidase domain protein; KEGG: bur:Bcep18194_B3008 FAD-linked oxidoreductase.
 
     0.486
Gbro_1282
PFAM: alanine racemase domain protein; KEGG: bur:Bcep18194_B3007 amino acid aldolase or racemase-like.
 
     0.442
Gbro_2814
Hypothetical protein.
  
     0.423
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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