STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2005PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: hypothetical protein; K00274 monoamine oxidase. (492 aa)    
Predicted Functional Partners:
Gbro_0958
PFAM: Aldehyde Dehydrogenase; KEGG: bur:Bcep18194_B1170 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.913
Gbro_1599
PFAM: Aldehyde Dehydrogenase; KEGG: mpt:Mpe_A2577 aldehyde dehydrogenase.
   
 0.913
Gbro_3822
PFAM: Aldehyde Dehydrogenase; KEGG: bmj:BMULJ_04931 NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.913
Gbro_3847
PFAM: Aldehyde Dehydrogenase; KEGG: rpi:Rpic_1338 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.913
Gbro_0581
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rme:Rmet_1093 alcohol dehydrogenase GroES- like protein.
    
  0.902
Gbro_3529
TIGRFAM: zinc-binding alcohol dehydrogenase family protein; PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: reh:H16_B1433 alcohol dehydrogenase, Zn- dependent.
    
  0.902
Gbro_3128
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: rpa:RPA0674 alcohol dehydrogenase.
    
 0.901
Gbro_2236
PFAM: histone deacetylase superfamily; KEGG: gsu:GSU1222 histone deacetylase/AcuC/AphA family protein.
   
 0.879
Gbro_2003
Ceramidase; PFAM: Neutral/alkaline nonlysosomal ceramidase; KEGG: pap:PSPA7_4675 hypothetical protein.
 
   
 0.863
Gbro_4057
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_A1540 glyoxalase/bleomycin resistance protein/dioxygenase.
     
  0.800
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.