STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2016PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: maq:Maqu_2848 NADH:flavin oxidoreductase/NADH oxidase. (687 aa)    
Predicted Functional Partners:
Gbro_2017
PFAM: Transcriptional regulator PadR-like; transcriptional regulator PadR family protein; KEGG: rso:RS05461 hypothetical protein.
 
  
 0.826
Gbro_3260
PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sat:SYN_02636 electron transfer flavoprotein beta-subunit.
  
 
 0.801
Gbro_4440
PFAM: cyclic nucleotide-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: cyclic nucleotide-binding; KEGG: afw:Anae109_3313 cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.759
Gbro_4160
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KR domain protein; FAD-binding 9 siderophore- interacting domain protein; GntR domain protein; short- chain dehydrogenase/reductase SDR; KEGG: avn:Avin_08610 benzoate 1,2-dioxygenase reductase.
  
  
 0.748
Gbro_2015
Hypothetical protein.
   
 0.734
Gbro_4503
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_6987 fatty oxidation complex, alpha subunit.
 
 
 0.706
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.687
Gbro_1356
PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: dar:Daro_2777 2-oxoacid ferredoxin oxidoreductase.
  
  
 0.685
Gbro_2915
TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine phosphorylation site; KEGG: yen:YE2104 PTS system beta-glucoside-specific IIABC component.
     
 0.681
Gbro_1160
PFAM: copper resistance protein CopC; KEGG: bja:bll4878 copper export protein.
    
   0.679
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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