STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2017PFAM: Transcriptional regulator PadR-like; transcriptional regulator PadR family protein; KEGG: rso:RS05461 hypothetical protein. (181 aa)    
Predicted Functional Partners:
Gbro_2016
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: maq:Maqu_2848 NADH:flavin oxidoreductase/NADH oxidase.
 
  
 0.826
Gbro_2018
KEGG: noc:Noc_0155 hypothetical protein.
       0.551
Gbro_2019
PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; globin; KEGG: hypothetical protein; K05916 nitric oxide dioxygenase.
       0.542
Gbro_2014
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: abb:ABBFA_001631 short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.482
Gbro_2015
Hypothetical protein.
  
    0.468
Gbro_2020
PFAM: protein of unknown function UPF0074; KEGG: bav:BAV2031 hypothetical protein.
       0.433
Gbro_3991
PFAM: regulatory protein TetR; KEGG: pfs:PFLU4391 putative TetR-family transcriptional regulator.
  
    0.402
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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