STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2252KEGG: bcj:BCAM2027 hypothetical protein. (305 aa)    
Predicted Functional Partners:
Gbro_2251
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
       0.758
rbpA
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.739
Gbro_2250
Hypothetical protein.
 
     0.737
Gbro_3186
PFAM: DNA polymerase III delta; KEGG: gme:Gmet_2298 DNA polymerase III, delta subunit.
  
     0.724
Gbro_2249
Hypothetical protein.
 
     0.707
Gbro_3490
TIGRFAM: conserved hypothetical protein; PFAM: Protein of unknown function DUF2342; KEGG: similar to CG5913-PA.
  
   
 0.669
Gbro_3010
PFAM: protein of unknown function YGGT; KEGG: tgr:Tgr7_2921 protein of unknown function YGGT.
  
     0.664
Gbro_2211
PFAM: protein of unknown function DUF349; KEGG: acp:A2cp1_2891 response regulator receiver.
  
     0.657
Gbro_3066
Hypothetical protein; KEGG: similar to trichohyalin.
  
     0.650
Gbro_0943
Hypothetical protein.
  
     0.647
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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