STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2282PFAM: Protein of unknown function DUF2029; KEGG: dol:Dole_2388 hypothetical protein. (469 aa)    
Predicted Functional Partners:
Gbro_2281
Hypothetical protein; KEGG: scl:sce3214 TetR family transcriptional regulator.
       0.757
Gbro_3034
TIGRFAM: carotene biosynthesis associated membrane protein; KEGG: afw:Anae109_0338 hypothetical protein.
 
  
 0.606
Gbro_2280
PFAM: Polyketide cyclase/dehydrase; cyclase/dehydrase.
       0.537
Gbro_2381
KEGG: dat:HRM2_13880 hypothetical protein.
 
  
 0.506
Gbro_4462
Hypothetical protein; KEGG: bte:BTH_I0976 cell division protein FtsK.
 
  
 0.485
Gbro_0208
KEGG: scl:sce0054 hypothetical protein.
 
  
 0.445
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.437
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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