STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2425PFAM: isochorismatase hydrolase; KEGG: dda:Dd703_1488 isochorismatase. (220 aa)    
Predicted Functional Partners:
Gbro_2426
PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_3645 2,3-dihydroxybenzoate-AMP ligase.
 
 
 0.999
Gbro_0620
PFAM: AMP-dependent synthetase and ligase; KEGG: vvy:VVA1306 vulnibactin-specific 2,3- dihydroxybenzoate-AMP ligase.
 
 
 0.997
Gbro_0643
PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: scl:sce3880 (2,3-dihydroxybenzoyl)adenylate synthase.
 
 
 0.997
Gbro_3734
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05860 peptide synthetase protein.
 
 
 0.995
Gbro_3715
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase.
 
 
 0.994
Gbro_3742
PFAM: condensation domain protein; KEGG: avi:Avi_9643 peptide synthetase.
 
 
 0.994
Gbro_4032
TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: avn:Avin_21220 isochorismate synthase.
 
 
 0.994
Gbro_0642
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: sml:Smlt2818 enterobactin synthase subunit F.
 
 
 0.993
Gbro_0215
PFAM: Beta-ketoacyl synthase; Acyl transferase; Thioesterase; phosphopantetheine-binding; KEGG: eca:ECA0603 type I polyketide synthase.
  
  
 0.990
Gbro_3732
TIGRFAM: amino acid adenylation domain protein; non- ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: pau:PA14_33610 peptide synthase.
 
 
 0.989
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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