STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2877PFAM: Extracellular ligand-binding receptor; KEGG: dac:Daci_4331 extracellular ligand-binding receptor. (419 aa)    
Predicted Functional Partners:
Gbro_3858
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bpa:BPP2584 putative ABC transport protein, ATP-binding component.
 
 
 0.976
Gbro_2889
PFAM: inner-membrane translocator; KEGG: avn:Avin_19630 high affinity branched chain amino acid ABC transporter, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.974
Gbro_2888
PFAM: inner-membrane translocator; KEGG: csa:Csal_1420 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.971
Gbro_2891
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_1421 ABC transporter related.
  
 
 0.953
Gbro_3859
PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; KEGG: dar:Daro_4098 inner-membrane translocator:ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.943
Gbro_3860
KEGG: bxe:Bxe_A2750 branched chain amino acid ABC transporter periplasmic ligand-binding protein.
     
  0.900
Gbro_2893
PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: gsu:GSU2822 response regulator.
  
 
 0.626
Gbro_2890
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_1422 ABC transporter related.
  
  
 0.569
Gbro_4298
PFAM: ANTAR domain protein; GAF domain protein; SMART: GAF domain protein.
  
 
 0.537
Gbro_0269
PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; SMART: AAA ATPase; KEGG: oan:Oant_2473 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.531
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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