STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_2928PFAM: AMP-dependent synthetase and ligase; KEGG: geo:Geob_2197 AMP-dependent synthetase and ligase. (560 aa)    
Predicted Functional Partners:
Gbro_2929
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: eba:ebA723 putative alcohol dehydrogenase.
  
 
 0.838
menB-2
Enoyl-CoA hydratase/isomerase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
   
 0.821
Gbro_0215
PFAM: Beta-ketoacyl synthase; Acyl transferase; Thioesterase; phosphopantetheine-binding; KEGG: eca:ECA0603 type I polyketide synthase.
 
 0.653
Gbro_0629
PFAM: Acyl transferase; KR domain protein; Methyltransferase type 11; Methyltransferase type 12; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: mxa:MXAN_4527 polyketide synthase.
  
 0.635
Gbro_0635
PFAM: Acyl transferase; KEGG: mxa:MXAN_4529 polyketide synthase type I.
 
 0.635
Gbro_3734
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05860 peptide synthetase protein.
 
 
0.600
Gbro_0083
PFAM: AMP-dependent synthetase and ligase; KEGG: rlt:Rleg2_6131 AMP-dependent synthetase and ligase.
 
 
0.597
Gbro_3742
PFAM: condensation domain protein; KEGG: avi:Avi_9643 peptide synthetase.
 
 
 0.589
Gbro_3715
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase.
  
 
0.581
Gbro_2925
PFAM: regulatory protein TetR; KEGG: bbr:BB0576 TetR family regulatory protein.
       0.545
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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