STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Gbro_3207PFAM: Transcription regulator, AsnC-type-like; KEGG: bbt:BBta_1252 AsnC family transcriptional regulator. (79 aa)    
Predicted Functional Partners:
thiL
Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.582
Gbro_3208
Hypothetical protein.
       0.549
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.531
Gbro_0728
PFAM: cyclase/dehydrase; Polyketide cyclase/dehydrase.
  
     0.527
Gbro_3205
KEGG: rso:RSc1133 hypothetical protein.
       0.525
Gbro_0990
PFAM: Protein of unknown function DUF2596.
  
     0.524
Gbro_0497
PFAM: Anion-transporting ATPase; KEGG: scl:sce8296 anion-transporting ATPase.
  
     0.477
Gbro_4382
Hypothetical protein.
  
  
 0.448
Gbro_3524
TIGRFAM: anti-sigma factor.
  
     0.434
Gbro_3044
PFAM: cyclase/dehydrase; Polyketide cyclase/dehydrase; KEGG: mxa:MXAN_4454 putative cyclase/dehydrase.
  
     0.432
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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