STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_3377PFAM: Protein of unknown function DUF2236; KEGG: bmj:BMULJ_00541 hypothetical protein. (364 aa)    
Predicted Functional Partners:
Gbro_3378
PFAM: regulatory protein TetR; KEGG: dal:Dalk_1538 transcriptional regulator, TetR family.
 
     0.775
Gbro_0043
PFAM: Protein of unknown function DUF2236; KEGG: bbt:BBta_3751 hypothetical protein.
  
     0.653
Gbro_1266
PFAM: Protein of unknown function DUF2236; KEGG: ppg:PputGB1_4702 hypothetical protein.
 
     0.582
Gbro_3836
PFAM: Luciferase-like, subgroup; KEGG: smd:Smed_4037 putative dehydrogenase protein.
  
     0.568
Gbro_3837
PFAM: protein of unknown function DUF227; aminoglycoside phosphotransferase; SMART: CHK kinase-like; KEGG: mpt:Mpe_A0979 hypothetical protein.
  
     0.558
Gbro_4605
KEGG: pla:Plav_2500 hypothetical protein.
  
     0.526
Gbro_2494
PFAM: Protein of unknown function DUF2236; KEGG: hypothetical protein.
  
     0.496
Gbro_3973
PFAM: regulatory protein TetR; KEGG: cti:RALTA_B0407 putative HTH-type transcriptional regulator, TetR family.
  
     0.446
Gbro_4299
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
  
     0.442
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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