STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_3405KEGG: hypothetical protein. (263 aa)    
Predicted Functional Partners:
Gbro_3403
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: vvu:VV1_0002 putative GTPase.
       0.778
Gbro_3404
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: hypothetical LOC588664; Belongs to the UPF0176 family.
       0.778
Gbro_3406
Hypothetical protein.
       0.726
Gbro_3401
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dol:Dole_2823 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.621
Gbro_3402
PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: bam:Bamb_4275 cell wall hydrolase/autolysin.
       0.483
Gbro_3399
PFAM: purine or other phosphorylase family 1; KEGG: pnu:Pnuc_0882 5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase.
       0.422
Gbro_3400
PFAM: Fructosamine/Ketosamine-3-kinase; aminoglycoside phosphotransferase; KEGG: tmz:Tmz1t_1431 fructosamine kinase.
       0.406
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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