STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_3582PFAM: membrane-flanked domain; KEGG: sml:Smlt4170 putative transmembrane protein. (507 aa)    
Predicted Functional Partners:
Gbro_3581
PFAM: membrane-flanked domain; KEGG: aeh:Mlg_1150 membrane-flanked domain- containing protein.
 
  
 0.987
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
       0.777
Gbro_3580
TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 3; KEGG: glo:Glov_3567 selenocysteine-specific translation elongation factor.
       0.777
Gbro_3583
PFAM: FAD dependent oxidoreductase; amine oxidase; KEGG: sbp:Sbal223_2308 FAD dependent oxidoreductase.
       0.579
Gbro_2556
Hypothetical protein; KEGG: GE15834 gene product from transcript GE15834- RA.
  
     0.537
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.508
Gbro_3568
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dal:Dalk_0528 short-chain dehydrogenase/reductase SDR.
       0.492
Gbro_1469
PFAM: cobalamin synthesis CobW domain protein; KEGG: bxe:Bxe_A4503 putative cobalamin synthesis protein/P47K.
 
    0.489
Gbro_3584
PFAM: regulatory protein TetR; KEGG: mxa:MXAN_6906 TetR family transcriptional regulator.
       0.485
Gbro_0166
PFAM: peptidase S49; KEGG: bja:blr2534 proteinase.
  
    0.459
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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