STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_3584PFAM: regulatory protein TetR; KEGG: mxa:MXAN_6906 TetR family transcriptional regulator. (204 aa)    
Predicted Functional Partners:
Gbro_3583
PFAM: FAD dependent oxidoreductase; amine oxidase; KEGG: sbp:Sbal223_2308 FAD dependent oxidoreductase.
  
    0.821
Gbro_4505
PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A0913 TetR family transcriptional regulator.
  
    0.537
Gbro_4638
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: smt:Smal_1175 chromosome replication initiation inhibitor protein.
   
   0.531
Gbro_0579
PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bac:BamMC406_4630 LysR family transcriptional regulator.
   
   0.530
Gbro_0172
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: hypothetical protein.
   
    0.529
Gbro_3131
PFAM: regulatory protein TetR; KEGG: bph:Bphy_4824 TetR family transcriptional regulator.
  
    0.521
Gbro_3581
PFAM: membrane-flanked domain; KEGG: aeh:Mlg_1150 membrane-flanked domain- containing protein.
       0.502
Gbro_3582
PFAM: membrane-flanked domain; KEGG: sml:Smlt4170 putative transmembrane protein.
       0.502
Gbro_4488
PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: dal:Dalk_2724 regulatory protein GntR HTH.
   
    0.495
cobB
PFAM: Silent information regulator protein Sir2; KEGG: psa:PST_1956 cobalamin biosynthetic protein; Belongs to the sirtuin family. Class III subfamily.
   
    0.493
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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