STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_3605PFAM: PfkB domain protein; KEGG: bgl:bglu_1g22040 IolC protein. (336 aa)    
Predicted Functional Partners:
Gbro_3607
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: bpy:Bphyt_5746 myo-inositol catabolism IolB domain protein.
 
 
 0.998
Gbro_3606
Hypothetical protein.
 
   
 0.971
Gbro_3608
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: lpc:LPC_1080 myo-inositol catabolism protein IolD; Belongs to the TPP enzyme family.
 
  
 0.962
iolG
Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
  
 0.924
Gbro_3604
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: hch:HCH_05768 dehydrogenase and related protein.
  
 0.857
Gbro_1981
Myo-inosose-2 dehydratase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: avi:Avi_7455 hypothetical protein.
 
  
 0.849
Gbro_3595
Myo-inosose-2 dehydratase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rhi:NGR_b04470 putative sugar phosphate isomerase/epimerase IoIE.
 
  
 0.833
Gbro_3600
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcs:BCAN_A1367 hypothetical protein.
 
  
 0.771
Gbro_1980
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ara:Arad_8173 hydroxypyruvate isomerase protein.
 
  
 0.765
Gbro_3602
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rlt:Rleg2_4849 periplasmic binding protein/LacI transcriptional regulator.
 
  
 0.764
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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