STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_3853PFAM: protein of unknown function UPF0089; KEGG: vap:Vapar_4801 acyltransferase, WS/DGAT/MGAT. (469 aa)    
Predicted Functional Partners:
Gbro_3852
KEGG: abo:ABO_2455 hypothetical protein.
 
     0.939
Gbro_4839
PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: rpa:RPA2512 putative lipid kinase.
 
 
  0.917
Gbro_1154
KEGG: hypothetical protein.
     
  0.900
Gbro_3854
PFAM: AMP-dependent synthetase and ligase; KEGG: bur:Bcep18194_C6898 AMP-dependent synthetase and ligase.
  
  
 0.828
Gbro_0215
PFAM: Beta-ketoacyl synthase; Acyl transferase; Thioesterase; phosphopantetheine-binding; KEGG: eca:ECA0603 type I polyketide synthase.
  
  
 0.767
Gbro_1750
PFAM: Male sterility domain; KR domain protein; 3- beta hydroxysteroid dehydrogenase/isomerase; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: hch:HCH_04995 short chain dehydrogenase.
 
  
 0.762
Gbro_3715
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3636 non-ribosomal peptide synthetase.
  
  
 0.755
Gbro_3734
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: rso:RS05860 peptide synthetase protein.
  
  
 0.755
Gbro_3855
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: scl:sce4330 putative 1-acyl-sn-glycerol-3- phosphate acyltransferase.
 
    0.754
Gbro_0642
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: sml:Smlt2818 enterobactin synthase subunit F.
  
  
 0.602
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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