Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gbro_4100TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bgl:bglu_2g18860 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (192 aa)    
Predicted Functional Partners:
Gbro_0097
PFAM: Anti-sigma-K factor RskA; KEGG: csa:Csal_1097 hypothetical protein.
 
 
 0.858
Gbro_3720
PFAM: Anti-sigma-K factor RskA; KEGG: bbt:BBta_6529 hypothetical protein.
 
 
 0.830
Gbro_4851
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: rfr:Rfer_4136 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.798
Gbro_3352
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bgl:bglu_1g09570 RNA polymerase, sigma-24 subunit, ECF subfamily protein.
  
   
 0.760
Gbro_3525
TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: scl:sce7566 ECF family RNA polymerase sigma factor.
  
   
 0.689
Gbro_4101
PFAM: Dak kinase; Dak phosphatase; KEGG: bpy:Bphyt_6567 dihydroxyacetone kinase, DhaK subunit.
       0.623
Gbro_1723
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: mxa:MXAN_2030 ECF subfamily RNA polymerase sigma factor.
  
   
 0.581
Gbro_0855
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bam:Bamb_3917 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.550
Gbro_0078
PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; KEGG: pol:Bpro_2251 beta-Ig-H3/fasciclin.
 
  
 0.511
Gbro_4099
PFAM: transcription activator effector binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: cvi:CV_4236 MerR family transcriptional regulator.
     
 0.504
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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