STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_4331KEGG: bpt:Bpet2893 manganese transport protein. (201 aa)    
Predicted Functional Partners:
Gbro_4330
PFAM: acyltransferase 3; KEGG: mes:Meso_0485 acyltransferase 3.
       0.631
Gbro_0218
PFAM: Ferritin Dps family protein; KEGG: ilo:IL0075 DNA-binding protein; Belongs to the Dps family.
 
  
 0.588
Gbro_0470
PFAM: Ferritin Dps family protein; KEGG: asu:Asuc_0163 ferritin Dps family protein; Belongs to the Dps family.
  
  
 0.535
Gbro_1231
PFAM: Transglycosylase domain protein; KEGG: hypothetical protein.
   
  
 0.511
Gbro_2517
PFAM: Catalase related subgroup; Catalase domain protein; KEGG: csa:Csal_0803 catalase; Belongs to the catalase family.
  
  
 0.489
Gbro_0664
Superoxide dismutase copper/zinc binding protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
 
  
 0.483
Gbro_2374
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
  
 0.477
Gbro_0007
Hypothetical protein; KEGG: CG10555 gene product from transcript CG10555- RA.
   
    0.471
Gbro_0472
KEGG: gem:GM21_0735 hypothetical protein.
   
    0.471
Gbro_4329
Hypothetical protein; KEGG: scl:sce0450 putative oxidoreductase.
     
 0.462
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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