STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_4381KEGG: hypothetical protein. (348 aa)    
Predicted Functional Partners:
Gbro_4379
PFAM: protein of unknown function DUF201; KEGG: pfl:PFL_6136 hypothetical protein.
 
     0.801
Gbro_4382
Hypothetical protein.
 
     0.782
Gbro_4550
Hypothetical protein.
  
  
 0.734
Gbro_1049
PFAM: Clp domain protein; KEGG: meprin and TRAF homology domain-containing protein / MATH domain-containing protein.
  
  
 0.719
Gbro_4474
KEGG: dia:Dtpsy_2778 hypothetical protein.
  
     0.684
Gbro_3296
KEGG: hypothetical protein.
  
     0.677
Gbro_4417
PFAM: phosphoesterase PA-phosphatase related; KEGG: mxa:MXAN_0451 PAP2 family protein.
 
  
 0.661
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.647
Gbro_2989
KEGG: gme:Gmet_3467 malto-oligosyltrehalose trehalohydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
   
 0.647
Gbro_1040
Hypothetical protein; KEGG: bja:blr6715 transcriptional regulator.
  
     0.638
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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