STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_4458PFAM: UspA domain protein; KEGG: bac:BamMC406_4283 UspA domain-containing protein. (200 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.751
Gbro_3245
PFAM: amino acid-binding ACT domain protein.
  
  
 0.750
Gbro_4461
Hypothetical protein.
       0.683
Gbro_4457
PFAM: glycoside hydrolase family 3 domain protein; KEGG: dvm:DvMF_0835 beta-N-acetylhexosaminidase.
     
 0.668
Gbro_0217
PFAM: EAL domain protein; KEGG: mei:Msip34_1295 diguanylate cyclase/phosphodiesterase.
  
     0.667
Gbro_0783
Hypothetical protein; KEGG: YALI0C23452p.
  
     0.651
Gbro_0209
PFAM: putative esterase; KEGG: bmj:BMULJ_04987 putative esterase.
  
     0.630
Gbro_0981
Hypothetical protein.
 
     0.620
Gbro_1598
PFAM: putative esterase; KEGG: Hypothetical protein CBG11242.
  
     0.612
Gbro_3800
PFAM: putative esterase; KEGG: mxa:MXAN_4935 putative esterase.
  
     0.600
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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