STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_4595PFAM: Carboxylesterase type B; KEGG: tau:Tola_1500 carboxylesterase. (550 aa)    
Predicted Functional Partners:
Gbro_4596
PFAM: regulatory protein TetR; KEGG: esa:ESA_02047 transcriptional regulator BetI.
       0.789
Gbro_4597
Hypothetical protein.
       0.538
Gbro_4598
PFAM: Uncharacterised conserved protein UCP028498; KEGG: rle:RL2357 hypothetical protein.
       0.538
Gbro_3147
Aminopeptidase Y; PFAM: peptidase M28; protease-associated PA domain protein; KEGG: psa:PST_2956 aminopeptidase.
  
 0.504
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
  0.476
Gbro_0352
PFAM: helicase domain protein; SNF2-related protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: eba:ebA251 ATP-dependent helicase.
   
 0.470
Gbro_0179
PFAM: Ankyrin; SMART: Ankyrin; KEGG: hypothetical protein.
  
 
 0.446
Gbro_2261
PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; KEGG: dol:Dole_3191 3'-5' exonuclease.
    
  0.434
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.