STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbro_4792Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase-like protein; KEGG: bpy:Bphyt_4731 luciferase-like monooxygenase. (266 aa)    
Predicted Functional Partners:
fgd
Glucose-6-phosphate dehydrogenase, F420- dependent; Catalyzes the coenzyme F420-dependent oxidation of glucose 6- phosphate (G6P) to 6-phosphogluconolactone.
  
   
 0.781
Gbro_3972
Hypothetical protein.
  
   
 0.764
Gbro_2798
Hypothetical protein.
  
   
 0.763
Gbro_4640
Hypothetical protein.
  
   
 0.759
Gbro_4791
PFAM: aminotransferase class I and II; KEGG: mes:Meso_2643 aminotransferase, class I and II.
       0.755
Gbro_2738
Hypothetical protein.
  
     0.750
Gbro_4262
Hypothetical protein.
  
   
 0.733
Gbro_3302
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: bpy:Bphyt_4253 protein of unknown function UPF0052 and CofD.
 
   
 0.727
Gbro_2504
TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like, subgroup; KEGG: pfl:PFL_2918 SsuD family monooxygenase.
  
     0.724
Gbro_0055
Hypothetical protein.
  
     0.715
Your Current Organism:
Gordonia bronchialis
NCBI taxonomy Id: 526226
Other names: G. bronchialis DSM 43247, Gordonia bronchialis ATCC 25592, Gordonia bronchialis CCUG 20989, Gordonia bronchialis CCUG 34956, Gordonia bronchialis CIP 100847, Gordonia bronchialis DSM 43247, Gordonia bronchialis IFO 6047, Gordonia bronchialis JCM 3198, Gordonia bronchialis JCM 3231, Gordonia bronchialis LMG 5355, Gordonia bronchialis NBRC 16047, Gordonia bronchialis NCTC 10667, Gordonia bronchialis VKM Ac-956, Gordonia bronchialis str. DSM 43247, Gordonia bronchialis str. Tsukamura 3410, Gordonia bronchialis strain DSM 43247
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