STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001957165_00824Unannotated protein. (228 aa)    
Predicted Functional Partners:
GCA_001957165_02374
Unannotated protein.
  
 0.916
GCA_001957165_01933
Unannotated protein.
   
 
 0.914
GCA_001957165_02146
Unannotated protein.
   
 0.880
GCA_001957165_00825
Unannotated protein.
       0.773
GCA_001957165_01425
Unannotated protein.
    
 0.753
GCA_001957165_00029
Unannotated protein.
      0.584
GCA_001957165_00030
Unannotated protein.
    
 0.563
GCA_001957165_00906
Unannotated protein.
   
   0.476
GCA_001957165_04135
Unannotated protein.
   
 
 0.469
GCA_001957165_00876
Unannotated protein.
    
   0.465
Your Current Organism:
Vibrio ostreicida
NCBI taxonomy Id: 526588
Other names: CECT 7398, DSM 21433, V. ostreicida, Vibrio ostreicida Prado et al. 2014, Vibrio sp. PP-200, Vibrio sp. PP-203, Vibrio sp. PP-204, marine bacterium PP-203, strain PP-203
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.