STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001957165_03570Unannotated protein. (320 aa)    
Predicted Functional Partners:
GCA_001957165_04149
Unannotated protein.
 
 
 0.983
GCA_001957165_01410
Unannotated protein.
 
 0.965
GCA_001957165_03569
Unannotated protein.
  
  
 0.947
GCA_001957165_01409
Unannotated protein.
 
 
 
 0.941
GCA_001957165_00471
Unannotated protein.
  
    0.931
GCA_001957165_00250
Unannotated protein.
  
    0.928
GCA_001957165_02146
Unannotated protein.
 
    0.925
GCA_001957165_03380
Unannotated protein.
  
 
 0.919
GCA_001957165_02136
Unannotated protein.
  
 
 0.896
GCA_001957165_03256
Unannotated protein.
  
  
 0.884
Your Current Organism:
Vibrio ostreicida
NCBI taxonomy Id: 526588
Other names: CECT 7398, DSM 21433, V. ostreicida, Vibrio ostreicida Prado et al. 2014, Vibrio sp. PP-200, Vibrio sp. PP-203, Vibrio sp. PP-204, marine bacterium PP-203, strain PP-203
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.