STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106512136FAST kinase domain-containing protein 2-like. (672 aa)    
Predicted Functional Partners:
mterf1
Transcription termination factor 1, mitochondrial.
   
 
 0.747
ngrn
Neugrin.
    
 
 0.703
mterf3
Transcription termination factor 3, mitochondrial isoform X1.
   
 
 0.679
tfb2m
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.674
rars2
Probable arginine--tRNA ligase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.664
trub2
Probable tRNA pseudouridine synthase 2.
   
 
 0.646
ddx28
Probable ATP-dependent RNA helicase DDX28.
   
 
 0.642
LOC106519626
Pentatricopeptide repeat-containing protein 1, mitochondrial-like.
    
 
 0.620
lamp2
Lysosome-associated membrane glycoprotein 2 isoform X1.
      
 0.573
LOC106516177
RNA pseudouridylate synthase domain-containing protein 4-like.
   
 
 0.533
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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