STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
edrf1Erythroid differentiation-related factor 1. (1249 aa)    
Predicted Functional Partners:
hspbp1
Hsp70-binding protein 1.
   
 
 0.914
ttc4
Tetratricopeptide repeat protein 4.
    
   0.897
chordc1
Cysteine and histidine-rich domain-containing protein 1.
    
   0.764
LOC106521295
Presqualene diphosphate phosphatase-like.
      
 0.624
LOC106534272
Protein Hikeshi.
      
 0.615
gpr182
G-protein coupled receptor 182; Belongs to the G-protein coupled receptor 1 family.
      
 0.611
spty2d1
Protein SPT2 homolog.
      
 0.583
tmem206
Transmembrane protein 206.
      
 0.542
sil1
Nucleotide exchange factor SIL1.
   
   0.538
exoc5
Exocyst complex component 5.
    
   0.530
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.