LOC106513227 protein (Austrofundulus limnaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106513227

Transmembrane emp24 domain-containing protein 11-like. (214 aa)

Predicted Functional Partners:

tmed10

0.950

tmed2

0.943

LOC106513756

0.774

LOC106518969

0.774

LOC106526942

0.774

surf4

0.740

LOC106527821

0.740

LOC106528981

0.740

copb1

0.686

cope

0.626

Your Current Organism:

Austrofundulus limnaeus

NCBI taxonomy Id: 52670
Other names: A. limnaeus

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106513227	LOC106513756	A0A2I4API4	A0A2I4ARU1	Transmembrane emp24 domain-containing protein 11-like.	Transmembrane emp24 domain-containing protein 7-like.	0.774
LOC106513227	LOC106518969	A0A2I4API4	A0A2I4BDR3	Transmembrane emp24 domain-containing protein 11-like.	Transmembrane emp24 domain-containing protein 3-like.	0.774
LOC106513227	LOC106526942	A0A2I4API4	A0A2I4CAW6	Transmembrane emp24 domain-containing protein 11-like.	TIR domain-containing adapter molecule 1-like.	0.774
LOC106513227	LOC106527821	A0A2I4API4	A0A2I4CE59	Transmembrane emp24 domain-containing protein 11-like.	Surfeit locus protein 4-like.	0.740
LOC106513227	LOC106528981	A0A2I4API4	A0A2I4CIC5	Transmembrane emp24 domain-containing protein 11-like.	Surfeit locus protein 4.	0.740
LOC106513227	copb1	A0A2I4API4	A0A2I4CQ10	Transmembrane emp24 domain-containing protein 11-like.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.686
LOC106513227	cope	A0A2I4API4	A0A2I4AKT7	Transmembrane emp24 domain-containing protein 11-like.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.626
LOC106513227	surf4	A0A2I4API4	A0A2I4BAS6	Transmembrane emp24 domain-containing protein 11-like.	Surfeit locus protein 4.	0.740
LOC106513227	tmed10	A0A2I4API4	A0A2I4B5G8	Transmembrane emp24 domain-containing protein 11-like.	Transmembrane emp24 domain-containing protein 10.	0.950
LOC106513227	tmed2	A0A2I4API4	A0A2I4CD88	Transmembrane emp24 domain-containing protein 11-like.	Transmembrane emp24 domain-containing protein 2 isoform X2.	0.943
LOC106513756	LOC106513227	A0A2I4ARU1	A0A2I4API4	Transmembrane emp24 domain-containing protein 7-like.	Transmembrane emp24 domain-containing protein 11-like.	0.774
LOC106513756	LOC106527821	A0A2I4ARU1	A0A2I4CE59	Transmembrane emp24 domain-containing protein 7-like.	Surfeit locus protein 4-like.	0.738
LOC106513756	LOC106528981	A0A2I4ARU1	A0A2I4CIC5	Transmembrane emp24 domain-containing protein 7-like.	Surfeit locus protein 4.	0.738
LOC106513756	copb1	A0A2I4ARU1	A0A2I4CQ10	Transmembrane emp24 domain-containing protein 7-like.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.664
LOC106513756	cope	A0A2I4ARU1	A0A2I4AKT7	Transmembrane emp24 domain-containing protein 7-like.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.552
LOC106513756	surf4	A0A2I4ARU1	A0A2I4BAS6	Transmembrane emp24 domain-containing protein 7-like.	Surfeit locus protein 4.	0.738
LOC106513756	tmed10	A0A2I4ARU1	A0A2I4B5G8	Transmembrane emp24 domain-containing protein 7-like.	Transmembrane emp24 domain-containing protein 10.	0.908
LOC106513756	tmed2	A0A2I4ARU1	A0A2I4CD88	Transmembrane emp24 domain-containing protein 7-like.	Transmembrane emp24 domain-containing protein 2 isoform X2.	0.917
LOC106518969	LOC106513227	A0A2I4BDR3	A0A2I4API4	Transmembrane emp24 domain-containing protein 3-like.	Transmembrane emp24 domain-containing protein 11-like.	0.774
LOC106518969	LOC106527821	A0A2I4BDR3	A0A2I4CE59	Transmembrane emp24 domain-containing protein 3-like.	Surfeit locus protein 4-like.	0.738