STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrit3annotation not available (683 aa)    
Predicted Functional Partners:
LOC106525122
Calcium-binding protein 2-like.
    
 0.819
traf7
E3 ubiquitin-protein ligase TRAF7.
    
 0.805
LOC106524413
E3 ubiquitin-protein ligase TRAF7.
    
 0.805
egflam
Pikachurin.
    
 0.804
wdr90
WD repeat-containing protein 90.
    
 0.743
LOC106516897
netrin-G1-like isoform X1.
    
 0.717
ntng1
netrin-G1.
    
 0.717
LOC106536550
Uncharacterized protein PB18E9.04c-like isoform X1.
    
 0.717
gpr108
Protein GPR108.
    
   0.684
LOC106523384
Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like.
    
 0.658
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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