STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pggt1bGeranylgeranyl transferase type-1 subunit beta. (367 aa)    
Predicted Functional Partners:
fnta
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha.
    
 0.997
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
      
 0.631
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.562
zmpste24
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
      
 0.470
rap1a
Ras-related protein Rap-1A.
    
 
 0.446
LOC106527728
Ras-related protein Rap-1b-like.
    
 
 0.446
ppp5c
Serine/threonine-protein phosphatase.
      
 0.407
rabggta
Geranylgeranyl transferase type-2 subunit alpha.
      
 0.405
LOC106524017
CAAX prenyl protease 2-like.
      
 0.404
LOC106533202
CAAX prenyl protease 2-like.
      
 0.404
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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