STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ythdc2Probable ATP-dependent RNA helicase YTHDC2. (1391 aa)    
Predicted Functional Partners:
LOC106512701
Intersectin-2-like.
    
  0.956
itsn2
Intersectin-2 isoform X1.
    
  0.956
LOC106523675
Intersectin-2-like.
    
  0.956
nudt21
Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]
   
 0.909
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 
 0.869
cstf1
Cleavage stimulation factor subunit 1.
   
 
 0.844
cstf3
Cleavage stimulation factor subunit 3.
   
 
 0.842
papolg
poly(A) polymerase gamma isoform X1.
   
 0.812
ap2m1
AP-2 complex subunit mu isoform X1; Belongs to the adaptor complexes medium subunit family.
    
 0.784
dhx9
ATP-dependent RNA helicase A.
    
0.773
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.