STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106514377Transient receptor potential cation channel subfamily M member 1-like isoform X1. (438 aa)    
Predicted Functional Partners:
LOC106535098
Transient receptor potential cation channel subfamily M member 7-like.
 
   
 0.875
LOC106514376
Transient receptor potential cation channel subfamily M member 1-like isoform X1.
 
     0.807
LOC106521354
Transient receptor potential cation channel subfamily M member 5-like.
 
   
 0.753
nudt9
ADP-ribose pyrophosphatase, mitochondrial isoform X1.
 
   
 0.427
trpa1
Transient receptor potential cation channel subfamily A member 1; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.409
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.