STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brd2Bromodomain-containing protein 2. (822 aa)    
Predicted Functional Partners:
LOC106527735
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 
 0.666
taf7l
Transcription initiation factor TFIID subunit 7-like isoform X1.
    
 
 0.649
rxrb
Retinoic acid receptor RXR-beta isoform X1.
    
 
 0.639
psmb8
Proteasome subunit beta.
    
 
 0.615
LOC106523071
pre-B-cell leukemia transcription factor 1-like.
   
  
 0.613
LOC106528310
PHD finger protein 1-like.
      
 0.613
whsc1l1
Histone-lysine N-methyltransferase NSD3 isoform X1.
   
 
 0.567
e2f1
Transcription factor E2F1.
    
 
 0.566
tcf19
Transcription factor 19.
    
 
 0.562
jmjd6
Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6.
    
 
 0.562
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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