STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
u2af2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (476 aa)    
Predicted Functional Partners:
LOC106531789
Splicing factor U2AF 35 kDa subunit.
   
 0.997
LOC106533089
Splicing factor U2AF 35 kDa subunit-like.
   
 0.997
sf3b1
Splicing factor 3B subunit 1.
   
 
 0.995
sf3b4
Splicing factor 3B subunit 4.
   
 
 0.994
cdc5l
Cell division cycle 5-like protein.
   
 0.993
sf3b3
Splicing factor 3B subunit 3.
   
 0.990
snrpa1
U2 small nuclear ribonucleoprotein A.
   
 
 0.988
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.986
phf5a
PHD finger-like domain-containing protein 5A.
   
 
 0.986
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 
 0.986
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.