STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg10Ubiquitin-like-conjugating enzyme ATG10. (242 aa)    
Predicted Functional Partners:
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.992
atg7
Ubiquitin-like modifier-activating enzyme ATG7 isoform X1.
   
 0.921
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 0.838
atg3
Autophagy-related protein 3.
    
 
 0.668
LOC106525260
Next to BRCA1 gene 1 protein-like.
      
 0.646
LOC106534857
Next to BRCA1 gene 1 protein-like isoform X1.
      
 0.646
nbr1
Next to BRCA1 gene 1 protein.
      
 0.646
atg4b
Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.
    
 
 0.644
atg13
Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.
      
 0.637
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
      
 0.637
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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