STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab38Ras-related protein Rab-38. (212 aa)    
Predicted Functional Partners:
gak
cyclin-G-associated kinase isoform X1.
    
 
 0.714
LOC106519874
cyclin-G-associated kinase-like.
    
 
 0.714
hps4
Hermansky-Pudlak syndrome 4 protein.
     
 0.661
grm5
Metabotropic glutamate receptor 5.
      
 0.650
igsf11
Immunoglobulin superfamily member 11.
      
 0.641
rabggta
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.606
hps1
Hermansky-Pudlak syndrome 1 protein.
     
 0.521
ptar1
Protein prenyltransferase alpha subunit repeat-containing protein 1.
    
 0.514
hps5
Hermansky-Pudlak syndrome 5 protein homolog; May regulate the synthesis and function of lysosomes and of highly specialized organelles, such as melanosomes and platelet dense granules.
    
 
 0.511
LOC106534266
Ankyrin repeat domain-containing protein 27-like.
    
 
 0.510
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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