STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106522035Vesicle-associated membrane protein 8-like isoform X1. (117 aa)    
Predicted Functional Partners:
stx17
Syntaxin-17; Belongs to the syntaxin family.
   
 0.993
snap29
Synaptosomal-associated protein 29.
   
 0.993
vti1a
Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1.
   
 0.960
stx5
Syntaxin-5 isoform X1; Belongs to the syntaxin family.
    
 0.944
LOC106532968
Vesicle-associated membrane protein 8-like isoform X1.
  
  
0.943
LOC106512701
Intersectin-2-like.
     
 0.931
itsn2
Intersectin-2 isoform X1.
     
 0.931
LOC106523675
Intersectin-2-like.
     
 0.931
stx8
Syntaxin-8.
    
 0.927
vps39
vam6/Vps39-like protein isoform X1.
    
 
 0.925
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.