STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc35d3Solute carrier family 35 member D3. (438 aa)    
Predicted Functional Partners:
mysm1
Histone H2A deubiquitinase MYSM1 isoform X1.
   
 
 0.662
LOC106525764
Probable hydrolase PNKD.
      
 0.654
larp6
La-related protein 6.
      
 0.579
slc35b4
UDP-xylose and UDP-N-acetylglucosamine transporter.
   
  
 0.568
slc35b3
Adenosine 3'-phospho 5'-phosphosulfate transporter 2.
   
  
 0.507
slc35b2
Adenosine 3'-phospho 5'-phosphosulfate transporter 1.
   
  
 0.501
sec61b
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
      
 0.499
LOC106531801
Syntaxin-7-like; Belongs to the syntaxin family.
    
 
 0.496
pi4k2a
Phosphatidylinositol 4-kinase type 2-alpha.
      
 0.495
pnkd
Probable hydrolase PNKD.
      
 0.493
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.