STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chmp5Charged multivesicular body protein 5. (220 aa)    
Predicted Functional Partners:
vps4b
Vacuolar protein sorting-associated protein 4B isoform X1; Belongs to the AAA ATPase family.
   
 0.980
vps4a
Vacuolar protein sorting-associated protein 4A; Belongs to the AAA ATPase family.
   
 0.980
vta1
Vacuolar protein sorting-associated protein VTA1 homolog isoform X1.
   
 0.978
chmp2a
Charged multivesicular body protein 2a.
   
 0.936
chmp3
Charged multivesicular body protein 3 isoform X1.
   
 0.907
ist1
IST1 homolog isoform X1.
    
 
 0.907
LOC106517461
Charged multivesicular body protein 5.
  
  
 
0.900
mlkl
Mixed lineage kinase domain-like protein.
    
  0.900
LOC106520975
Charged multivesicular body protein 4c-like.
  
0.831
chmp4b
Charged multivesicular body protein 4b.
  
0.831
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.