STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106528816Transcriptional repressor CTCF-like. (644 aa)    
Predicted Functional Partners:
LOC106514226
Double-strand-break repair protein rad21 homolog.
   
 0.672
rad21
Double-strand-break repair protein rad21 homolog.
   
 0.672
LOC106531229
Double-strand-break repair protein rad21 homolog isoform X1.
   
 0.672
stag2
Cohesin subunit SA-2.
   
 0.509
LOC106525232
Cohesin subunit SA-2-like.
   
 0.509
stag3
Cohesin subunit SA-3.
   
 0.509
stag1
Cohesin subunit SA-1.
   
 0.509
LOC106531872
Cohesin subunit SA-2-like.
   
 0.509
smc3
Structural maintenance of chromosomes protein.
   
 0.479
LOC106532374
Telomerase Cajal body protein 1-like.
     
 0.455
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.