STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106532085Polycomb protein SCMH1-like. (754 aa)    
Predicted Functional Partners:
pcgf2
Polycomb group RING finger protein 2 isoform X1.
   
 0.804
bmi1
Polycomb complex protein BMI-1.
   
 0.804
rnf2
E3 ubiquitin-protein ligase RING2.
    
 0.767
ring1
E3 ubiquitin-protein ligase RING1.
    
 0.767
LOC106518743
Chromobox protein homolog 8-like.
    
 0.712
LOC106524489
Chromobox protein homolog 8-like.
    
 0.712
eed
Polycomb protein EED.
   
 0.686
cbx6
Chromobox protein homolog 6.
    
 0.679
bccip
Protein BCCIP homolog; Belongs to the BCP1 family.
      
 0.650
dock1
Dedicator of cytokinesis protein 1; Belongs to the DOCK family.
      
 0.650
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.