STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106533285TBC1 domain family member 9B-like. (1188 aa)    
Predicted Functional Partners:
gak
cyclin-G-associated kinase isoform X1.
   
 
  0.918
LOC106519874
cyclin-G-associated kinase-like.
   
 
  0.918
dnajc6
Putative tyrosine-protein phosphatase auxilin isoform X1.
   
 
  0.616
snapin
SNARE-associated protein Snapin.
     
 0.525
ap5m1
AP-5 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
     
 0.520
igf2r
LOW QUALITY PROTEIN: cation-independent mannose-6-phosphate receptor.
   
 
  0.519
ap1b1
AP complex subunit beta.
   
 
  0.462
LOC106528049
AP complex subunit beta.
   
 
  0.462
yipf6
Protein YIPF.
   
 
  0.454
ap4b1
AP-4 complex subunit beta-1.
   
 
  0.428
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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