STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdsr3-ketodihydrosphingosine reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (359 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase 1.
     
 0.992
sptlc3
Serine palmitoyltransferase 3.
     
 0.969
LOC106521256
Serine palmitoyltransferase 2-like.
     
 0.969
LOC106535590
Serine palmitoyltransferase 2-like.
     
 0.969
LOC106528220
Neutral ceramidase.
     
 0.954
degs2
Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2.
   
 
 0.951
LOC106535193
Sphingolipid delta(4)-desaturase DES1-like.
   
 
 0.951
sphk1
Sphingosine kinase 1.
     
 0.942
LOC106534563
Sphingosine kinase 1-like.
     
 0.942
LOC106536159
Sphingosine kinase 1-like.
     
 0.942
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.