STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srrm1Serine/arginine repetitive matrix protein 1 isoform X1. (832 aa)    
Predicted Functional Partners:
LOC106536937
Serine/arginine repetitive matrix protein 2-like.
   
 0.970
alyref
THO complex subunit 4.
    
 0.958
upf1
Regulator of nonsense transcripts 1 isoform X1.
    
 
 0.955
rnps1
RNA-binding protein with serine-rich domain 1 isoform X1.
   
 0.941
tcerg1
Transcription elongation regulator 1.
   
 0.934
ranbp2
E3 SUMO-protein ligase RanBP2.
   
 0.933
cdc40
pre-mRNA-processing factor 17.
    
 0.931
upf3b
Regulator of nonsense transcripts 3B isoform X1.
    
 0.929
upf3a
Regulator of nonsense transcripts 3A isoform X1.
    
 0.929
LOC106534882
Uncharacterized protein DDB_G0271670-like isoform X1.
   
 0.924
Your Current Organism:
Austrofundulus limnaeus
NCBI taxonomy Id: 52670
Other names: A. limnaeus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.